SNP Profiles matching SPA 9 [COL]

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 Key

 1234567891011121314
_Input profile
CGATACGTCTACCCAGCTAAGGAGACCT
1._MO_20
CGATACGTCTACCCAGCTAAGGAGACCT
2._MO_20
CGATACGTCTACCCAGCTAAGGAGACCT
3._MO_20
CGATACGTCTACCCAGCTAAGGAGACCT
4._MO_20
CGATACGTCTACCCAGCTAAGGAGACCT
5._MO_20
CGATACGTCTACCCAGCTAAGGAGACCT
6._MO_20
CGATACGTCTACCCAGCTAAGGAGACCT
7._MO_20
CGATACGTCTACCCAGCTAAGGAGACCT
8._MO_20
CGATACGTCTACCCAGCTAAGGAGACCT
9._MO_20
CGATACGTCTACCCAGCTAAGGAGACCT
10._GC-01-121-6-18
CGATACGTCTACCCAGCTAAGGAGACCT
11._GC-01-121-6-18
CGATACGTCTACCCAGCTAAGGAGACCT
12._GC-01-121-6-18
CGATACGTCTACCCAGCTAAGGAGACCT
13._GC-01-121-6-18
CGATACGTCTACCCAGCTAAGGAGACCT
14._GC-01-121-6-18
CGATACGTCTACCCAGCTAAGGAGACCT
15._GC-08-167-4-10
CGATACGTCTACCCAGCTAAGGAGACCT
16._GC-08-167-4-10
CGATACGTCTACCCAGCTAAGGAGACCT
17._GC-08-167-4-10
CGATACGTCTACCCAGCTAAGGAGACCT
18._GC-08-167-4-10
CGATACGTCTACCCAGCTAAGGAGACCT
19._SPA_9_[COL]
CGATACGTCTACCCAGCTAAGGAGACCT
20._SPA_9_[COL]
CGATACGTCTACCCAGCTAAGGAGACCT
21._SPA_9_[COL]
CGATACGTCTACCCAGCTAAGGAGACCT
22._SPA_9_[COL]
CGATACGTCTACCCAGCTAAGGAGACCT
23._SPA_9_[COL]
CGATACGTCTACCCAGCTAAGGAGACCT
24._SPA_9_[COL]
CGATACGTCTACCCAGCTAAGGAGACCT
25._GC-01-099-5-16
CGATACGTCTACCCAGCTAAGGAGACCT
26._GC-01-099-5-16
CGATACGTCTACCCAGCTAAGGAGACCT
27._GC-01-099-5-16
CGATACGTCTACCCAGCTAAGGAGACCT
28._GC-01-099-5-16
CGATACGTCTACCCAGCTAAGGAGACCT
29._GC-01-099-5-16
CGATACGTCTACCCAGCTAAGGAGACCT
30._GC-01-099-5-16
CGATACGTCTACCCAGCTAAGGAGACCT
31._MO_20
CGATACGTCTACCCAGCTAAGGAGACCT
32._GC-01-121-6-18
CGATACGTCTACCCAGCTAAGGAGACCT
33._SPA_9_[COL]
CGATACGT_ACCCAGCTAAGGAGACCT
34._SPA_9_[COL]
CGATACGT_ACCCAGCTAAGGAGACCT
35._GC-01-099-5-16
CGATACGT_ACCCAGCTAAGGAGACCT
36._GC-01-099-5-16
CGATACGT_ACCCAGCTAAGGAGACCT
37._MO_20
CGATACGTCTACCCAGCTAAGGAGACCT
38._RUQ_233
__CCGTCTACCCAGCTAA_AGACCT
 1516171819202122232425262728
_Input profile
GTCGCCTTAAGGCGCTCTCGATCTAACT
1._MO_20
GTCGCCTTAAGGCGCTCTCGATCTAACT
2._MO_20
GTCGCCTTAAGGCGCTCTCGATCTAACT
3._MO_20
GTCGCCTTAAGGCGCTCTCGATCTAACT
4._MO_20
GTCGCCTTAAGGCGCTCTCGATCTAACT
5._MO_20
GTCGCCTTAAGGCGCTCTCGATCTAACT
6._MO_20
GTCGCCTTAAGGCGCTCTCGATCTAACT
7._MO_20
GTCGCCTTAAGGCGCTCTCGATCTAACT
8._MO_20
GTCGCCTTAAGGCGCTCTCGATCTAACT
9._MO_20
GTCGCCTTAAGGCGCTCTCGATCTAACT
10._GC-01-121-6-18
GTCGCCTTAAGGCGCTCTCGATCTAACT
11._GC-01-121-6-18
GTCGCCTTAAGGCGCTCTCGATCTAACT
12._GC-01-121-6-18
GTCGCCTTAAGGCGCTCTCGATCTAACT
13._GC-01-121-6-18
GTCGCCTTAAGGCGCTCTCGATCTAACT
14._GC-01-121-6-18
GTCGCCTTAAGGCGCTCTCGATCTAACT
15._GC-08-167-4-10
GTCGCCTTAAGGCGCTCTCGATCTAACT
16._GC-08-167-4-10
GTCGCCTTAAGGCGCTCTCGATCTAACT
17._GC-08-167-4-10
GTCGCCTTAAGGCGCTCTCGATCTAACT
18._GC-08-167-4-10
GTCGCCTTAAGGCGCTCTCGATCTAACT
19._SPA_9_[COL]
GTCGCCTTAAGGCGCTCTCGATCTAACT
20._SPA_9_[COL]
GTCGCCTTAAGGCGCTCTCGATCTAACT
21._SPA_9_[COL]
GTCGCCTTAAGGCGCTCTCGATCTAACT
22._SPA_9_[COL]
GTCGCCTTAAGGCGCTCTCGATCTAACT
23._SPA_9_[COL]
GTCGCCTTAAGGCGCTCTCGATCTAACT
24._SPA_9_[COL]
GTCGCCTTAAGGCGCTCTCGATCTAACT
25._GC-01-099-5-16
GTCGCCTTAAGGCGCTCTCGATCTAACT
26._GC-01-099-5-16
GTCGCCTTAAGGCGCTCTCGATCTAACT
27._GC-01-099-5-16
GTCGCCTTAAGGCGCTCTCGATCTAACT
28._GC-01-099-5-16
GTCGCCTTAAGGCGCTCTCGATCTAACT
29._GC-01-099-5-16
GTCGCCTTAAGGCGCTCTCGATCTAACT
30._GC-01-099-5-16
GTCGCCTTAAGGCGCTCTCGATCTAACT
31._MO_20
GTCGCCTT_GGCGCTCTCGATCTAACT
32._GC-01-121-6-18
GTCGCCTT_GGCGCTCTCGATCTAACT
33._SPA_9_[COL]
GTCGCCTTAAGGCGCTCTCGATCTAACT
34._SPA_9_[COL]
GTCGCCTTAAGGCGCTCTCGATCTAACT
35._GC-01-099-5-16
GTCGCCTTAAGGCGCTCTCGATCTAACT
36._GC-01-099-5-16
GTCGCCTTAAGGCGCTCTCGATCTAACT
37._MO_20
GTCGCCTTAAGGCGCTCTCGATCTAACT
38._RUQ_233
GTCGCCTT_GGCGTT____AACT
 293031323334353637383940  
_Input profile
AGAACTCTGTCTACCTTTCCAGCTX_XX_X
1._MO_20
AGAACTCTGTCTACCTTTCCAACTX_XX_X
2._MO_20
AGAACTCTGTCTACCTTTCCAACTX_XX_X
3._MO_20
AGAACTCTGTCTACCTTTCCAACTX_XX_X
4._MO_20
AGAACTCTGTCTACCTTTCCAACTX_XX_X
5._MO_20
AGAACTCTGTCTACCTTTCCAACTX_XX_X
6._MO_20
AGAACTCTGTCTACCTTTCCAACTX_XX_X
7._MO_20
AGAACTCTGTCTACCTTTCCAACTX_XX_X
8._MO_20
AGAACTCTGTCTACCTTTCCAACTX_XX_X
9._MO_20
AGAACTCTGTCTACCTTTCCAACTX_XX_X
10._GC-01-121-6-18
AGAACTCTGTCTACCTTTCCAACTX_XX_X
11._GC-01-121-6-18
AGAACTCTGTCTACCTTTCCAACTX_XX_X
12._GC-01-121-6-18
AGAACTCTGTCTACCTTTCCAACTX_XX_X
13._GC-01-121-6-18
AGAACTCTGTCTACCTTTCCAACTX_XX_X
14._GC-01-121-6-18
AGAACTCTGTCTACCTTTCCAACTX_XX_X
15._GC-08-167-4-10
AGAACTCTGTCTACCTTTCCAACTX_XX_X
16._GC-08-167-4-10
AGAACTCTGTCTACCTTTCCAACTX_XX_X
17._GC-08-167-4-10
AGAACTCTGTCTACCTTTCCAACTX_XX_X
18._GC-08-167-4-10
AGAACTCTGTCTACCTTTCCAACTX_XX_X
19._SPA_9_[COL]
AGAACTCTGTCTACCTTTCCAACTX_XX_X
20._SPA_9_[COL]
AGAACTCTGTCTACCTTTCCAACTX_XX_X
21._SPA_9_[COL]
AGAACTCTGTCTACCTTTCCAACTX_XX_X
22._SPA_9_[COL]
AGAACTCTGTCTACCTTTCCAACTX_XX_X
23._SPA_9_[COL]
AGAACTCTGTCTACCTTTCCAACTX_XX_X
24._SPA_9_[COL]
AGAACTCTGTCTACCTTTCCAACTX_XX_X
25._GC-01-099-5-16
AGAACTCTGTCTACCTTTCCAACTX_XX_X
26._GC-01-099-5-16
AGAACTCTGTCTACCTTTCCAACTX_XX_X
27._GC-01-099-5-16
AGAACTCTGTCTACCTTTCCAACTX_XX_X
28._GC-01-099-5-16
AGAACTCTGTCTACCTTTCCAACTX_XX_X
29._GC-01-099-5-16
AGAACTCTGTCTACCTTTCCAACTX_XX_X
30._GC-01-099-5-16
AGAACTCTGTCTACCTTTCCAACTX_XX_X
31._MO_20
AGAACTCTGTCTACCTTTCCAACTX_XX_X
32._GC-01-121-6-18
AGAACTCTGTCTACCTTTCCAACTX_XX_X
33._SPA_9_[COL]
AGAACTCTGTCTACCTTTCCAACTX_XX_X
34._SPA_9_[COL]
AGAACTCTGTCTACCTTTCCAACTX_XX_X
35._GC-01-099-5-16
AGAACTCTGTCTACCTTTCCAACTX_XX_X
36._GC-01-099-5-16
AGAACTCTGTCTACCTTTCCAACTX_XX_X
37._MO_20
AGAATTCTGTCTACCTTTCCAACTX_XX_X
38._RUQ_233
____GT___TTCCAA_X_XX_X

Input profile: SPA_9_[COL] RUQ_235

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

1._MO_20

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8410 4
 Dapeng Zhang, 2016

2._MO_20

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8410 3
 Dapeng Zhang, 2016

3._MO_20

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8410 2
 Dapeng Zhang, 2016

4._MO_20

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8410 1
 Dapeng Zhang, 2016

5._MO_20

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 4 > FP
 Dapeng Zhang, 2016

6._MO_20

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 2 > FP
 Dapeng Zhang, 2016

7._MO_20

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 1 > FP
 Dapeng Zhang, 2016

8._MO_20

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 11
 Dapeng Zhang, 2016

9._MO_20

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 9
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

10._MO_20 GC-01-121-6-18

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

11._MO_20 GC-01-121-6-18

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP3
 Mars, 2018

12._MO_20 GC-01-121-6-18

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

13._MO_20 GC-01-121-6-18

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

14._MO_20 GC-01-121-6-18

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

15._MO_20 GC-08-167-4-10

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

16._MO_20 GC-08-167-4-10

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

17._MO_20 GC-08-167-4-10

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

18._MO_20 GC-08-167-4-10

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

19._SPA_9_[COL]

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1516 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

20._SPA_9_[COL]

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1516 3
 Dapeng Zhang, 2016

21._SPA_9_[COL]

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1516 5
 Dapeng Zhang, 2016

22._SPA_9_[COL]

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1516 1 > FP
 Dapeng Zhang, 2016

23._SPA_9_[COL]

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1516 14 > F
 Dapeng Zhang, 2016

24._SPA_9_[COL]

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1516 6 > FP
 Dapeng Zhang, 2016

25._SPA_9_[COL] GC-01-099-5-16

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

26._SPA_9_[COL] GC-01-099-5-16

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

27._SPA_9_[COL] GC-01-099-5-16

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

28._SPA_9_[COL] GC-01-099-5-16

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

29._SPA_9_[COL] GC-01-099-5-16

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP4
 Mars, 2018

30._SPA_9_[COL] GC-01-099-5-16

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

31._MO_20

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 10 > F
 Dapeng Zhang, 2016

32._MO_20 GC-01-121-6-18

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

33._SPA_9_[COL]

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1516 4
 Dapeng Zhang, 2016

34._SPA_9_[COL]

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1516 9 > FP
 Dapeng Zhang, 2016

35._SPA_9_[COL] GC-01-099-5-16

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

36._SPA_9_[COL] GC-01-099-5-16

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018

37._MO_20

97.5 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B D238 T2
 Dapeng Zhang, 2016

38._RUQ_233 RUQ_233

93.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 

  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP242 10TcSNP372
11TcSNP429 12TcSNP469 13TcSNP529 14TcSNP534 15TcSNP560
16TcSNP577 17TcSNP591 18TcSNP619 19TcSNP645 20TcSNP723
21TcSNP872 22TcSNP891 23TcSNP917 24TcSNP929 25TcSNP953
26TcSNP994 27TcSNP998 28TcSNP1060 29TcSNP1062 30TcSNP1075
31TcSNP1144 32TcSNP1165 33TcSNP1253 34TcSNP1270 35TcSNP1350
36TcSNP1414 37TcSNP1442 38TcSNP1458 39TcSNP1484 40TcSNP1520